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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_377197_378676_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
377197 - 378676
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTCTTGA
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
QEPRKFPAARDKLQHVTNIS
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.4
58.5
43.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
1
73.5
40.5
Minor 5ss
46.6
-0.3
2.3
59.5
44.9
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359
ENSAPLT00000046339
371502 - 389676
18175