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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_378907_380021_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
378907 - 380021
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTTTTAATA
Flanking Amino Acid:
KELILPVKSQGMLKPQKRRQ
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.1
0.39
1.1
69.4
40.8
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
71
0.66
1.1
72.62
33.8

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046339
371502 - 389676
18175
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359