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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_382648_382863_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
382648 - 382863
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCGT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
KGEMEKIKKLRSQGASPTQY
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
67.2
0.39
1.1
61.8
44.4
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359
ENSAPLT00000046339
371502 - 389676
18175