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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_384429_385455_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
384429 - 385455
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTGATTAATT
Flanking Amino Acid:
TMLQRMEEIERYQAAVCRRF
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69
0.43
1
64.6
39.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.9
0.42
2
81.98
39.5

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359
ENSAPLT00000046339
371502 - 389676
18175