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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_387282_387456_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
387282 - 387456
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTCTGTATTT
Flanking Amino Acid:
DILIEKLFDDNDIDENKEPK
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.2
0.72
0.9
73.4
41
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
51.4
0.12
2.2
76.5
40.9

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359
ENSAPLT00000046339
371502 - 389676
18175
ENSAPLT00000034434
371502 - 396757
25256