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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_440294_443978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
440294 - 443978
Intron Length:
3685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
SCKVFPLLHEEGVKHQKCKT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
PITPNM3
Ensembl Gene ID:
ENSAPLG00000006762
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007045
440255 - 484004
43750