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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_453729_459205_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
453729 - 459205
Intron Length:
5477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
TCATTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTCCTAAATCT
Flanking Amino Acid:
SRRGSISSIQDNPLLTDDSS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.1
38.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.4
0.64
0.8
73.9
30.9
Minor 5ss
25.5
-2.8
3
30.9
42.7
Minor BPS
44.1
-0.3
2.1
65.82
44.9

Associated Gene:

Gene:
PITPNM3
Ensembl Gene ID:
ENSAPLG00000006762
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007045
440255 - 484004
43750