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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_459388_461827_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
459388 - 461827
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGAATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTCCTGTGAATT
Flanking Amino Acid:
TITQHHAFLSSLSEVNLGRF
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
69.8
0.45
1
59.2
45.2
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
47.8
-0
2.1
69.48
41.9

Associated Gene:

Gene:
PITPNM3
Ensembl Gene ID:
ENSAPLG00000006762
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007045
440255 - 484004
43750