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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_475755_476792_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
475755 - 476792
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GCTCTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTCATTT
Flanking Amino Acid:
LRKRTHVKLRNVTANHRAND
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.7
0.62
0.9
73.8
35.4
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
49.1
0.02
1.8
69.09
42.3

Associated Gene:

Gene:
PITPNM3
Ensembl Gene ID:
ENSAPLG00000006762
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007045
440255 - 484004
43750