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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_479262_481583_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
479262 - 481583
Intron Length:
2322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAGTATTTATTC
Flanking Amino Acid:
VGVYPIKMVVRGDQSSATSY
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.5
0.66
0.9
70.1
41.4
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
47.9
-0.1
1.7
54.58
37.7

Associated Gene:

Gene:
PITPNM3
Ensembl Gene ID:
ENSAPLG00000006762
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007045
440255 - 484004
43750