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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_494293_502606_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
494293 - 502606
Intron Length:
8314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGATCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTGCTCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
79.4
29.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.2
0.52
1
69.2
41.7
Minor 5ss
38.6
-1.3
3.3
53.2
45
Minor BPS
64.4
0.53
1.7
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007017
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007271
488862 - 503304
14443