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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_502791_503107_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
502791 - 503107
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTATTCTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.4
0.62
0.9
78.2
30.6
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
59.7
0.38
1.6
75.38
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007017
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007271
488862 - 503304
14443
Gene:
TEKT1
Ensembl Gene ID:
ENSAPLG00000007024
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007304
502607 - 508032
5426