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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_506873_507148_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
506873 - 507148
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
LVIAQKCLLNRQSRVGIDLV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.8
85.4
28.2
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
TEKT1
Ensembl Gene ID:
ENSAPLG00000007024
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007304
502607 - 508032
5426