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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_520071_521420_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
520071 - 521420
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGATA
5'SS Class:
major
3'SS Sequence:
TTCATCATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTGCATTAACA
Flanking Amino Acid:
WCRSKTIGYKHIDLQNFSSS
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
77.2
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
70
0.45
1
65.5
39.8
Minor 5ss
29.8
-2.3
3.3
39
46.4
Minor BPS
61.4
0.35
1.8
69.26
42.8

Associated Gene:

Gene:
SMTNL2
Ensembl Gene ID:
ENSAPLG00000025272
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036274
510809 - 535695
24887