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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_521539_522108_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
521539 - 522108
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
GTTAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTGTTAATT
Flanking Amino Acid:
LFEKFEQDSAKGKGESRAKL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.8
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.1
0.66
1
69.6
45.6
Minor 5ss
42.3
-0.8
2.8
52.9
38.4
Minor BPS
63.4
0.5
2
84.73
36.1

Associated Gene:

Gene:
SMTNL2
Ensembl Gene ID:
ENSAPLG00000025272
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036274
510809 - 535695
24887