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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_523756_525297_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
523756 - 525297
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
LRTLASSATGENTTSIAKPV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.9
80.9
35.5
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
SMTNL2
Ensembl Gene ID:
ENSAPLG00000025272
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036274
510809 - 535695
24887