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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_9201_9412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9201 - 9412
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTCCAAACA
Flanking Amino Acid:
EFFEMLEKMQAPKLEEQRTG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.1
0.47
1
67.2
38.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
53.9
0.12
2
71.32
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005197
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005432
6645 - 23369
16725
ENSAPLT00000043527
6645 - 22036
15392
ENSAPLT00000021154
6645 - 23014
16370
ENSAPLT00000019806
1222 - 22036
20815