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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_9458_9985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9458 - 9985
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTGA
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GGTCTTTTGATT
Flanking Amino Acid:
EQRTGSQKHKEDYIPYPSID
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.8
38.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.5
0.91
0.6
83.8
31.2
Minor 5ss
42
-0.9
2.4
50.7
45.6
Minor BPS
57.8
0.33
1.2
69.18
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005197
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043527
6645 - 22036
15392
ENSAPLT00000021154
6645 - 23014
16370
ENSAPLT00000019806
1222 - 22036
20815
ENSAPLT00000005432
6645 - 23369
16725