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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_95164_97679_R

Intron Information:

Intron Rank:
138718
Intron Class:
major
Intron Phase:
Intron Coordinates:
95164 - 97679
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGACGTCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AAGTTCATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.9
0.47
1
66.4
40.5
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
60
0.29
1.6
66.77
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022140
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040199
92430 - 98582
6153