Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000237.1_101660_101797_R

Intron Information:

Intron Rank:

151190

Intron Class:

major

Intron Phase:

Intron Coordinates:

101660 - 101797

Intron Length:

138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTTAGTTTC

5'SS Class:

major

3'SS Sequence:

TGCACCCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTGAACTAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.2

74.3

37.2

Major BPS

84.4

0.85

34.5

Major PPT

70.1

0.45

0.9

61.6

34.9

Minor 5ss

40.7

-1

2.7

46.4

Minor BPS

46.2

-0.2

62.83

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028862

Chromosome:

PEDO01000237.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042019

84797 - 101809

17013