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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000237.1_156848_160847_F

Intron Information:

Intron Rank:
143799
Intron Class:
major
Intron Phase:
Intron Coordinates:
156848 - 160847
Intron Length:
4000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.3
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.5
0.53
1
74.9
27.8
Minor 5ss
38.9
-1.2
2.9
48.7
47.5
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027490
Chromosome:
PEDO01000237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027674
146002 - 161070
15069