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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000237.1_193284_200127_R

Intron Information:

Intron Rank:
149910
Intron Class:
major
Intron Phase:
Intron Coordinates:
193284 - 200127
Intron Length:
6844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.2
0.7
0.8
76.5
32.1
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
48.9
-0
2.1
65.65
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028215
Chromosome:
PEDO01000237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043438
193222 - 208851
15630
ENSAPLT00000035751
193222 - 206126
12905