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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000237.1_33031_35437_F

Intron Information:

Intron Rank:
150761
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
33031 - 35437
Intron Length:
2407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GGAACATATCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
51.7
0.04
1
40.8
43.1
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
59.8
0.39
2
82.86
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031007
Chromosome:
PEDO01000237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047721
24325 - 42916
18592