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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000237.1_37451_42774_F

Intron Information:

Intron Rank:
150763
Intron Class:
major
Intron Phase:
Intron Coordinates:
37451 - 42774
Intron Length:
5324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATATGTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.5
0.75
0.8
76.2
37.8
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
55.1
0.24
2
75.49
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031007
Chromosome:
PEDO01000237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047721
24325 - 42916
18592