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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_111928_114840_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111928 - 114840
Intron Length:
2913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
STDNSDNEAKEDIKAENTTG
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
HOXC10
Ensembl Gene ID:
ENSAPLG00000007155
Chromosome:
PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007418
111650 - 115624
3975