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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_126720_128053_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

126720 - 128053

Intron Length:

1334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAGGTAGA

5'SS Class:

major

3'SS Sequence:

TGGTTCTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

GGATATTTACCC

Flanking Amino Acid:

NKEGSKSSNSSAPRTRKKRC

Intron Amino Acid Position:

226

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

62.6

43.8

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

72.1

0.5

1.1

75.7

38.5

Minor 5ss

-1.7

37.9

41.1

Minor BPS

48.9

-0.1

1.8

57.84

40.5

Associated Gene:

Gene:

HOXC11

Ensembl Gene ID:

ENSAPLG00000007301

Chromosome:

PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007571

125981 - 129252

3272