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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_136736_140970_F

Intron Information:

Intron Rank:
137996
Intron Class:
major
Intron Phase:
Intron Coordinates:
136736 - 140970
Intron Length:
4235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTCCCGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.6
0.42
0.8
59.8
37
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
48.9
0
2.3
72.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024274
Chromosome:
PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040995
134682 - 141536
6855