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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_146997_147782_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146997 - 147782

Intron Length:

786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGACCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAA

U12 Branch Point Sequence:

AAATGCTCAACT

Flanking Amino Acid:

LNQGSTLGTGGAPWYPMHTR

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

65.2

Major BPS

70.6

0.51

1.1

71.6

36.4

Major PPT

0.45

0.9

63.7

36.8

Minor 5ss

33.4

-1.9

3.1

41.2

38.9

Minor BPS

55.3

0.25

73.29

42.9

Associated Gene:

Gene:

HOXC12

Ensembl Gene ID:

ENSAPLG00000023432

Chromosome:

PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022877

146595 - 148695

2101