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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_158506_160676_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158506 - 160676

Intron Length:

2171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTGC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

SAHLWKSPFPDVVPLQPEVS

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

64.1

43.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

98.8

1.1

0.5

95.2

16.3

Minor 5ss

42.8

-0.8

3.2

58.8

46.1

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

HOXC13

Ensembl Gene ID:

ENSAPLG00000007333

Chromosome:

PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007604

158249 - 161329

3081