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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_160987_161284_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

160987 - 161284

Intron Length:

298

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCCTGCCGC

5'SS Class:

major

3'SS Sequence:

CAACCTGCAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCGTCAA

U12 Branch Point Sequence:

ACGGCGTCAACC

Flanking Amino Acid:

GLPPRWPDGLKTCAYHPGEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.6

0.25

1.3

49.3

43.5

Major BPS

48.1

-0.1

1.4

51.3

44.2

Major PPT

57.4

0.17

51.3

37.4

Minor 5ss

29.5

-2.3

3.9

39.1

41.4

Minor BPS

44.2

-0.4

2.3

52.39

45.1

Associated Gene:

Gene:

HOXC13

Ensembl Gene ID:

ENSAPLG00000007333

Chromosome:

PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007604

158249 - 161329

3081