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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_239749_262920_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
239749 - 262920
Intron Length:
23172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTAAATT
Flanking Amino Acid:
FVCNAPGCGQRFTNEDHLAV
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
84.3
29.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
42.7
-0.8
3
58.2
46.4
Minor BPS
70.4
0.72
1.6
85.57
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029389
Chromosome:
PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022230
239680 - 265570
25891