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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_263018_265370_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
263018 - 265370
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCGGC
5'SS Class:
major
3'SS Sequence:
GCCTCCCGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCTCTCTGACC
Flanking Amino Acid:
PARTDSVIIADQTPTPTRFL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
63.2
41.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
59.6
0.22
1
53.9
35.4
Minor 5ss
42.8
-0.8
3.2
58.8
46.1
Minor BPS
55.8
0.16
1.7
65.96
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029389
Chromosome:
PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022230
239680 - 265570
25891