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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_40459_40968_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40459 - 40968
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCAAC
5'SS Class:
major
3'SS Sequence:
CCCTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTTCT
Flanking Amino Acid:
PWMKKIHVSTVNPNYNGGEP
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.7
38.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80.6
0.69
0.7
71.9
32.6
Minor 5ss
45.9
-0.4
2.6
56.9
42.2
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
HOXC4
Ensembl Gene ID:
ENSAPLG00000011136
Chromosome:
PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011583
40115 - 41512
1398