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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000238.1_98482_100166_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

98482 - 100166

Intron Length:

1685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTCGA

5'SS Class:

major

3'SS Sequence:

TCTTCTTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCTTTTTCAAAA

Flanking Amino Acid:

HKEEKHELDPNNPVANWIHA

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

64.4

41.6

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

88.5

0.87

0.6

87.7

22.3

Minor 5ss

35.4

-1.7

2.9

42.9

39.2

Minor BPS

57.2

0.22

1.6

68.07

38.6

Associated Gene:

Gene:

HOXC9

Ensembl Gene ID:

ENSAPLG00000007152

Chromosome:

PEDO01000238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007415

98237 - 100704

2468