About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_106476_108764_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106476 - 108764
Intron Length:
2289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTCACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTACCTCACTC
Flanking Amino Acid:
GTFPQRYLVSVKFWNKGFGP
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72
0.5
0.9
70.2
35.1
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
51.4
0.02
1.9
65.92
39.8

Associated Gene:

Gene:
DPP7
Ensembl Gene ID:
ENSAPLG00000006425
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006683
105123 - 129450
24328