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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_108905_109637_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108905 - 109637
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGACACCAACA
Flanking Amino Acid:
QEALVIFAEHRYYGKSLPFG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
45.6
-0.3
2.1
62.96
42.5

Associated Gene:

Gene:
DPP7
Ensembl Gene ID:
ENSAPLG00000006425
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006683
105123 - 129450
24328