About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_109802_111686_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
109802 - 111686

Intron Length:
1885

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAAGGTT

5'SS Class:
strong_major

3'SS Sequence:
TGTCCTGTGCCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGTTAAA

U12 Branch Point Sequence:
TGTCTGTTAAAG

Flanking Amino Acid:
ADCPVIAFGGSYGGMLSAYM

Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.7
0.77
0.9
79.3
34.3

Major BPS
75.2
0.63
1.1
75.9
36.3

Major PPT
68.2
0.41
1.1
61.3
44.5

Minor 5ss
34.5
-1.8
3.9
55
49.2

Minor BPS
48
-0.2
2.2
58.62
42.7

Associated Gene:

Gene:
DPP7

Ensembl Gene ID:

Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

105123 - 129450
24328