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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_114803_115591_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114803 - 115591
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
HQIKNLCLSGAYDEISSKMA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.7
81.9
29.7
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
DPP7
Ensembl Gene ID:
ENSAPLG00000006425
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006683
105123 - 129450
24328