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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_126913_127023_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126913 - 127023
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
GTTCTTTTACCT
Flanking Amino Acid:
GMDAEAWDYQVCTEINLTFD
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
74.2
0.6
1
67
39.4
Major PPT
83.7
0.76
0.8
81.2
30.5
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
60.7
0.41
1.6
77.46
39.1

Associated Gene:

Gene:
DPP7
Ensembl Gene ID:
ENSAPLG00000006425
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006683
105123 - 129450
24328