About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_127181_127469_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127181 - 127469
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCATCTTTGAAT
Flanking Amino Acid:
QWLQTNFWGGDLKSASNIIF
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
35
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
42.6
-0.8
2.8
58.3
46.4
Minor BPS
65.7
0.57
1.4
76.65
40.1

Associated Gene:

Gene:
DPP7
Ensembl Gene ID:
ENSAPLG00000006425
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006683
105123 - 129450
24328