Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_12776_12849_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12776 - 12849

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTCCCAATCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAC

U12 Branch Point Sequence:

TTACCACTGACT

Flanking Amino Acid:

IVYQTIIMCTETPLLDVEEC

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

76.8

31.8

Major BPS

63.8

0.34

1.2

57.4

41.4

Major PPT

67.9

0.4

0.9

58.3

Minor 5ss

39.1

-1.2

50.2

46.2

Minor BPS

50.8

0.11

76.28

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007625

Chromosome:

PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007902

10544 - 14381

3838