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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_13900_14217_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13900 - 14217
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CACATCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCATTACTC
Flanking Amino Acid:
TMWLETKICVWTDLDVVAME
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
70
0.45
0.9
62.1
34.2
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
52.7
0.06
1.9
64.11
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007625
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007902
10544 - 14381
3838