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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_139778_140077_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139778 - 140077
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTAGTCTGAATT
Flanking Amino Acid:
QKGHKDVEIKPADRHNLLRP
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.2
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
35
-1.7
3.1
48.8
47
Minor BPS
62
0.45
1.5
77.16
39.6

Associated Gene:

Gene:
MAN1B1
Ensembl Gene ID:
ENSAPLG00000006155
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042863
128620 - 155548
26929
ENSAPLT00000006394
112120 - 155548
43429