Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_143306_144213_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143306 - 144213

Intron Length:

908

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGGTTTTTATTT

Flanking Amino Acid:

SRLTGDEKFKKAVDEVMKHV

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

71.3

40.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.4

0.93

0.6

84.6

30.4

Minor 5ss

37.7

-1.4

3.1

47.3

48.3

Minor BPS

57.8

0.32

1.6

71.48

40.5

Associated Gene:

Gene:

MAN1B1

Ensembl Gene ID:

ENSAPLG00000006155

Chromosome:

PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042863

128620 - 155548

26929

ENSAPLT00000006394

112120 - 155548

43429