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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_145202_146718_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145202 - 146718
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AAATCCATAAGT
Flanking Amino Acid:
DTMWILGLKEEFEEARIWVA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
85.7
28.6
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
56.5
0.28
1.9
73.97
42

Associated Gene:

Gene:
MAN1B1
Ensembl Gene ID:
ENSAPLG00000006155
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042863
128620 - 155548
26929
ENSAPLT00000006394
112120 - 155548
43429