Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_152046_152535_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

152046 - 152535

Intron Length:

490

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTATGA

5'SS Class:

major

3'SS Sequence:

TTTATTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

CATTCTTTATTT

Flanking Amino Acid:

AGDYPELSPQKQPKLPHIRR

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

63.2

37.6

Major BPS

83.9

0.84

73.9

41.3

Major PPT

90.5

0.91

0.7

89.1

27.7

Minor 5ss

43.5

-0.7

2.8

47.1

Minor BPS

64.2

0.52

1.6

76.5

40.9

Associated Gene:

Gene:

MAN1B1

Ensembl Gene ID:

ENSAPLG00000006155

Chromosome:

PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042863

128620 - 155548

26929

ENSAPLT00000006394

112120 - 155548

43429