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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_35765_36202_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35765 - 36202
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CACATATAAACT
Flanking Amino Acid:
KGEPGLPGTKGEMGTQGLPG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
45
-0.3
1.9
58.24
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007558
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007848
34708 - 48503
13796