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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_36257_39639_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36257 - 39639
Intron Length:
3383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTGTCTCTTACA
Flanking Amino Acid:
PGKAGPPGTKGVAGDPGFPG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
54.9
0.15
2
71.87
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007558
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007848
34708 - 48503
13796