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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_45178_45644_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45178 - 45644
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
CCCAACAGAACT
Flanking Amino Acid:
NDNIHFLTSLGNCELRIDLR
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
80.7
0.69
0.7
73.1
31.8
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
42.8
-0.4
1.9
55.51
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007558
Chromosome:
PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007848
34708 - 48503
13796