Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_57504_59021_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57504 - 59021

Intron Length:

1518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGATTC

5'SS Class:

major

3'SS Sequence:

CTTCTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

TCATCTTCAGCC

Flanking Amino Acid:

VMDLAASCCRVEAFKRPSFS

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

34.3

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

84.1

0.77

0.8

76.2

37.8

Minor 5ss

36.6

-1.5

3.2

42.5

44.6

Minor BPS

0.04

1.8

63.35

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007334

Chromosome:

PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007610

57402 - 70297

12896